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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV5646134 SARS-CoV-2/Crocuta crocuta/USA/CO-CDPHE-2102104979-2/2021 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM181962 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-29 Crocuta crocuta 29470 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 25537 86.65
OEAV5646135 SARS-CoV-2/Crocuta crocuta/USA/CO-CDPHE-2102104991-2/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM181951 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-29 Crocuta crocuta 29780 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29511 99.10
OEAV9648398 hCoV-19/hyena/USA/CO-21-033158-002/2021 EPI_ISL_6810900 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-28 Crocuta crocuta 29790 2021-11-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Colorado State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29790 100.00
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